BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002C08SP1|AL424937
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig169 1029 0.0
3x_Contig396 646 0.0
>3x_Contig169
Length = 1338
Score = 1029 bits (515), Expect = 0.0
Identities = 533/543 (98%), Gaps = 1/543 (0%)
Strand = Plus / Minus
Query: 1 tggatcttctaacaaggagacaatagaratcaacactgattccacagtctgtrctggaga 60
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 542 tggatcttctaacaaggagacaatagaaatcaacactgattccacagtctgtactggaga 483
Query: 61 ccaagtttcttcatcgggctcatccgaggkggggttccccgattggtgtaagakagaaat 120
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 482 ccaagtttcttcatcgggctcatccgaggtggg-ttccccgattggtgtaagatagaaat 424
Query: 121 acacaacctaccatcacggtaaacgttcgggtggtaaattgctggagttaatctaaaagt 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 423 acacaacctaccatcacggtaaacgttcgggtggtaaattgctggagtaaatctaaaagt 364
Query: 181 tggaggagaaaatgggaaatcgtccgggaatttcatttgagccttgaaataacctccgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tggaggagaaaatgggaaatcgtccgggaatttcatttgagccttgaaataacctccgtg 304
Query: 241 gtagatggattcctcatttaagaccattacaccgatgttccacaagaatatgtttgaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtagatggattcctcatttaagaccattacaccgatgttccacaagaatatgtttgaatc 244
Query: 301 atcttctaatgcaatatggraactaggaatagccttcttcggrtcagtgagttccctgta 360
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 atcttctaatgcaatatggaaactaggaatagccttcttcggatcagtgagttccctgta 184
Query: 361 ttgtcgtaataacaaagaagctgcagtattcttgccgctcatactttagaaagagtattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttgtcgtaataacaaagaagctgcagtattcttgccgctcatactttagaaagagtattt 124
Query: 421 ctatggtaaaaagatgttctgtgtgctgattgaracttccccctttttccaaaactgata 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 123 ctatggtaaaaagatgttctgtgtgctgattgaaacttccccctttttccaaaactgata 64
Query: 481 tatccagaccaagaaagttcagttattagggctgacgattagaagtractgttgcttggt 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 63 tatccagaccaagaaagttcagttattagggctgacgattagaagtaactgttgcttggt 4
Query: 541 gtt 543
|||
Sbjct: 3 gtt 1
>3x_Contig396
Length = 1324
Score = 646 bits (323), Expect = 0.0
Identities = 328/331 (99%)
Strand = Plus / Plus
Query: 632 atgaracgtaaagccaaacaaaagataggacaatacaatataccaactgagtggtgtgag 691
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11 atgaaacgtaaagccaaacaaaagataggacaatacaatataccaactgagtagtgtgag 70
Query: 692 tttttgcgtttgtacaagtatacccgcccaaaagtctatgcaacctctccttatcacctg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tttttgcgtttgtacaagtatacccgcccaaaagtctatgcaacctctccttatcacctg 130
Query: 752 tttattgatactctcatttaaatgcaaatacaataatttgtaattaaaattaatagttgt 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tttattgatactctcatttaaatgcaaatacaataatttgtaattaaaattaatagttgt 190
Query: 812 ctgtgttttgaccttttaaatttcttctgaaactggtttacaaaaaagaaccaagctgaa 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctgtgttttgaccttttaaatttcttctgaaactggtttacaaaaaagaaccaagctgaa 250
Query: 872 tgccgaaaagtcaagaaaaaccgtcccaagacaaaataagcaaaaaccgttgggktgtgt 931
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 251 tgccgaaaagtcaagaaaaaccgtcccaagacaaaataagcaaaaaccgttgggttgtgt 310
Query: 932 actcttggaagataccgttctattgttcagg 962
|||||||||||||||||||||||||||||||
Sbjct: 311 actcttggaagataccgttctattgttcagg 341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6635
Number of Sequences: 1807
Number of extensions: 6635
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.4 bits)